Katie Ah, right, thank you.
I had to unreconcile payments to achieve this. Now I am striggling with reconciliation. This is such a confusing process. Registering the fee seems to have generated a payment in Crunch that needs to be reconciled, but there is nothing to reconcile it with (because, by definition, it’s an amount of money that I have not been paid).
The actual payment from Stripe now no longer has anything to reconcile with, because I had to register the payment as the full payment (per your instructions) in order to register the fee, but this means that it does not match with the actual payment I received (because it’s less than the full payment, because of the fee).
Every time I follow an instruction to solve this problem it throws up another one!